dnase i hypersensitive sites sequencing (dnase-seq) Search Results


dnase seq libraries  (New England Biolabs)
99
New England Biolabs dnase seq libraries
Dnase Seq Libraries, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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column dnase i rna seq libraries  (New England Biolabs)
99
New England Biolabs column dnase i rna seq libraries
Column Dnase I Rna Seq Libraries, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/dnase+i+hypersensitive+sites+sequencing+%28dnase-seq%29/pmc08921580__gutjnl___2020___323276supp001-49-50-66?v=New+England+Biolabs
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column dnase i rna seq libraries - by Bioz Stars, 2026-07
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dnase-seq data set  (Sasquatch Software Corporation)
90
Sasquatch Software Corporation dnase-seq data set
Dnase Seq Data Set, supplied by Sasquatch Software Corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/dnase+i+hypersensitive+sites+sequencing+%28dnase-seq%29/pmc05630036-148-13-0?v=Sasquatch+Software+Corporation
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dnase-seq data set - by Bioz Stars, 2026-07
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dnase-seq data  (Epigenomics ag)
90
Epigenomics ag dnase-seq data
Dnase Seq Data, supplied by Epigenomics ag, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/dnase+i+hypersensitive+sites+sequencing+%28dnase-seq%29/pmc06022084-341-0-15?v=Epigenomics+ag
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dnase-seq data - by Bioz Stars, 2026-07
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aspergillus oryzae dnase  (Novozymes limited)
90
Novozymes limited aspergillus oryzae dnase
Aspergillus Oryzae Dnase, supplied by Novozymes limited, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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aspergillus oryzae dnase - by Bioz Stars, 2026-07
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encode chromhmm and dnase-seq datasets  (Broad Institute Inc)
90
Broad Institute Inc encode chromhmm and dnase-seq datasets
Encode Chromhmm And Dnase Seq Datasets, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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encode chromhmm and dnase-seq datasets - by Bioz Stars, 2026-07
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dna enrichment assay  (STARR Life Sciences)
90
STARR Life Sciences dna enrichment assay
Dna Enrichment Assay, supplied by STARR Life Sciences, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/dnase+i+hypersensitive+sites+sequencing+%28dnase-seq%29/pmc07844911-125-15-22?v=STARR+Life+Sciences
Average 90 stars, based on 1 article reviews
dna enrichment assay - by Bioz Stars, 2026-07
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fetal brain dnase-seq sample  (Epigenomics ag)
90
Epigenomics ag fetal brain dnase-seq sample
Fetal Brain Dnase Seq Sample, supplied by Epigenomics ag, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/dnase+i+hypersensitive+sites+sequencing+%28dnase-seq%29/pmc09135341-209-4-11?v=Epigenomics+ag
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fetal brain dnase-seq sample - by Bioz Stars, 2026-07
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rnase free dnaseset  (Qiagen)
99
Qiagen rnase free dnaseset
Rnase Free Dnaseset, supplied by Qiagen, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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rnase free dnaseset - by Bioz Stars, 2026-07
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bisulfite sequencing  (Epigenomics ag)
90
Epigenomics ag bisulfite sequencing
Bisulfite Sequencing, supplied by Epigenomics ag, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/dnase+i+hypersensitive+sites+sequencing+%28dnase-seq%29/pmc06560639-9-16-1?v=Epigenomics+ag
Average 90 stars, based on 1 article reviews
bisulfite sequencing - by Bioz Stars, 2026-07
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roadmap dnase-seq sra files  (Epigenomics ag)
90
Epigenomics ag roadmap dnase-seq sra files
Flow of mt-DGF analysis. ( A ) Distribution of raw mt-DGF lengths calculated for ENCODE samples. y -Axis represents length of each mt-DGF in nucleotides. ( B ) Conversion of a representative mt-DGF site from raw mt-DGF site data (black lines) collected from all analyzed samples to the final listed mt-DGF site (red line). Notice that for each mt-DGF, overlapping raw mt-DGFs were combined in all analyzed samples (for ENCODE and <t>Roadmap,</t> separately); the length of each combined mt-DGF was between the 5′ and 3′ nucleotide positions of the most proximal and distal overlapping raw DGFs, respectively. ( C ) Length distribution (in nucleotides; y -axis) of all final (combined) mt-DGF sites. ( D ) F -score graph of a representative mt-DGF site, which overlaps a well-known regulatory element—the light strand origin of replication (OriL): ( x -axis) mtDNA position; ( y -axis) calculated F -score; (black curve) mean F -score values, surrounded by their calculated SD (gray area), based on all ENCODE samples. ( E ) A flow chart of our mt-DGF analysis. The Venn diagram shows the actual number of common mt-DGF sites (i.e., identified in at least 90% of the samples) in the ENCODE and Roadmap data sets. The number of common sites whose mtDNA location overlapped between the two data sets is indicated.
Roadmap Dnase Seq Sra Files, supplied by Epigenomics ag, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/dnase+i+hypersensitive+sites+sequencing+%28dnase-seq%29/pmc06071632-123-0-9?v=Epigenomics+ag
Average 90 stars, based on 1 article reviews
roadmap dnase-seq sra files - by Bioz Stars, 2026-07
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dnaase-seq data  (DBase VI LLC)
90
DBase VI LLC dnaase-seq data
Flow of mt-DGF analysis. ( A ) Distribution of raw mt-DGF lengths calculated for ENCODE samples. y -Axis represents length of each mt-DGF in nucleotides. ( B ) Conversion of a representative mt-DGF site from raw mt-DGF site data (black lines) collected from all analyzed samples to the final listed mt-DGF site (red line). Notice that for each mt-DGF, overlapping raw mt-DGFs were combined in all analyzed samples (for ENCODE and <t>Roadmap,</t> separately); the length of each combined mt-DGF was between the 5′ and 3′ nucleotide positions of the most proximal and distal overlapping raw DGFs, respectively. ( C ) Length distribution (in nucleotides; y -axis) of all final (combined) mt-DGF sites. ( D ) F -score graph of a representative mt-DGF site, which overlaps a well-known regulatory element—the light strand origin of replication (OriL): ( x -axis) mtDNA position; ( y -axis) calculated F -score; (black curve) mean F -score values, surrounded by their calculated SD (gray area), based on all ENCODE samples. ( E ) A flow chart of our mt-DGF analysis. The Venn diagram shows the actual number of common mt-DGF sites (i.e., identified in at least 90% of the samples) in the ENCODE and Roadmap data sets. The number of common sites whose mtDNA location overlapped between the two data sets is indicated.
Dnaase Seq Data, supplied by DBase VI LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/dnase+i+hypersensitive+sites+sequencing+%28dnase-seq%29/pmc06447774-289-6-32?v=DBase+VI+LLC
Average 90 stars, based on 1 article reviews
dnaase-seq data - by Bioz Stars, 2026-07
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Image Search Results


Flow of mt-DGF analysis. ( A ) Distribution of raw mt-DGF lengths calculated for ENCODE samples. y -Axis represents length of each mt-DGF in nucleotides. ( B ) Conversion of a representative mt-DGF site from raw mt-DGF site data (black lines) collected from all analyzed samples to the final listed mt-DGF site (red line). Notice that for each mt-DGF, overlapping raw mt-DGFs were combined in all analyzed samples (for ENCODE and Roadmap, separately); the length of each combined mt-DGF was between the 5′ and 3′ nucleotide positions of the most proximal and distal overlapping raw DGFs, respectively. ( C ) Length distribution (in nucleotides; y -axis) of all final (combined) mt-DGF sites. ( D ) F -score graph of a representative mt-DGF site, which overlaps a well-known regulatory element—the light strand origin of replication (OriL): ( x -axis) mtDNA position; ( y -axis) calculated F -score; (black curve) mean F -score values, surrounded by their calculated SD (gray area), based on all ENCODE samples. ( E ) A flow chart of our mt-DGF analysis. The Venn diagram shows the actual number of common mt-DGF sites (i.e., identified in at least 90% of the samples) in the ENCODE and Roadmap data sets. The number of common sites whose mtDNA location overlapped between the two data sets is indicated.

Journal: Genome Research

Article Title: A common pattern of DNase I footprinting throughout the human mtDNA unveils clues for a chromatin-like organization

doi: 10.1101/gr.230409.117

Figure Lengend Snippet: Flow of mt-DGF analysis. ( A ) Distribution of raw mt-DGF lengths calculated for ENCODE samples. y -Axis represents length of each mt-DGF in nucleotides. ( B ) Conversion of a representative mt-DGF site from raw mt-DGF site data (black lines) collected from all analyzed samples to the final listed mt-DGF site (red line). Notice that for each mt-DGF, overlapping raw mt-DGFs were combined in all analyzed samples (for ENCODE and Roadmap, separately); the length of each combined mt-DGF was between the 5′ and 3′ nucleotide positions of the most proximal and distal overlapping raw DGFs, respectively. ( C ) Length distribution (in nucleotides; y -axis) of all final (combined) mt-DGF sites. ( D ) F -score graph of a representative mt-DGF site, which overlaps a well-known regulatory element—the light strand origin of replication (OriL): ( x -axis) mtDNA position; ( y -axis) calculated F -score; (black curve) mean F -score values, surrounded by their calculated SD (gray area), based on all ENCODE samples. ( E ) A flow chart of our mt-DGF analysis. The Venn diagram shows the actual number of common mt-DGF sites (i.e., identified in at least 90% of the samples) in the ENCODE and Roadmap data sets. The number of common sites whose mtDNA location overlapped between the two data sets is indicated.

Article Snippet: Roadmap DNase-seq SRA files were downloaded from the Roadmap Epigenomics project website ( ) ( http://egg2.wustl.edu/roadmap/web_portal/index.html ).

Techniques:

Evidence for tissue specificity in the mt-DGF pattern. PCO analysis of the Roadmap collection. ( A ) All Roadmap samples (“large” and “small” refer to large intestine and small intestine, respectively). ( B ) All samples from fetal day 97 (total = 12; skin = 7). Encircled are the human skin samples.

Journal: Genome Research

Article Title: A common pattern of DNase I footprinting throughout the human mtDNA unveils clues for a chromatin-like organization

doi: 10.1101/gr.230409.117

Figure Lengend Snippet: Evidence for tissue specificity in the mt-DGF pattern. PCO analysis of the Roadmap collection. ( A ) All Roadmap samples (“large” and “small” refer to large intestine and small intestine, respectively). ( B ) All samples from fetal day 97 (total = 12; skin = 7). Encircled are the human skin samples.

Article Snippet: Roadmap DNase-seq SRA files were downloaded from the Roadmap Epigenomics project website ( ) ( http://egg2.wustl.edu/roadmap/web_portal/index.html ).

Techniques: